Crop SNPdb Data Download

Download genotype matrices for all canola and wheat samples in the database by chromosome.

Brassica chromosome size and maximum SNP count shown for B. napus (A and C genomes) and B. juncea (B genome). Available SNPs will generally be lower than the maximum count from the SNP chip.

Brassica 60k bulk download							Wheat 90k bulk download
Chr	Size (Mb)	SNP#	B.napus	B.juncea	B.rapa	B.oleracea	Chr	Size (Mb)	SNP#	T.aestivum
A01	31.16	2061				-	1A	594.10	3439
A02	31.34	1699				-	1B	689.85	4072
A03	39.49	2878				-	1D	495.45	2979
A04	23.31	2056				-	2A	780.80	4166
A05	28.60	2102				-	2B	801.26	5839
A06	31.90	1977				-	2D	651.85	3526
A07	28.90	2422				-	3A	750.84	3317
A08	21.74	1364				-	3B	830.83	3795
A09	46.72	2406				-	3D	615.55	2549
A10	19.96	2078				-	4A	744.59	3048
C01	47.95	3595		-	-		4B	673.62	2717
C02	58.66	3571		-	-		4D	509.86	1849
C03	71.85	3659		-	-		5A	709.77	3575
C04	61.04	4630		-	-		5B	713.15	4349
C05	52.72	1427		-	-		5D	566.08	2940
C06	44.61	1960		-	-		6A	618.08	3226
C07	52.50	2594		-	-		6B	720.99	3513
C08	46.29	1947		-	-		6D	473.59	2280
C09	60.21	1473		-	-		7A	736.71	3766
B01	45.93	324	-		-	-	7B	750.62	3338
B02	67.31	415	-		-	-	7D	638.69	2815
B03	58.66	435	-		-	-	Pan	365.49	626
B04	43.48	209	-		-	-	Unplaced	480.98	873
B05	64.15	339	-		-	-
B06	36.77	319	-		-	-
B07	43.07	262	-		-	-
B08	69.94	306	-		-	-
Unplaced	51.33	1057